DTR-phage-pipeline

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Bioinformatics Pipeline Inoperative: Package Dependencies Updated?

16

Hi all, We are trying to get this pipeline working with the included control dataset so we can use it to characterize a variety of novel bacteriophages that we think...

ttschulze

This update: * fixes issues with the latest snakemake (version 8) (Issue #13) * fixes dependency issues with the umap environment

jmeppley

Failed to install DTR-phage-pipeline

5

 After run: ``` conda env create -f environment.yml conda activate DTR-phage-pipeline snakemake --use-conda -p -r -j 10 ``` I got the error, -bash: /home1/jialh/tools/miniconda3/envs/DTR-phage-pipeline/bin/snakemake: /home1/jialh/tools/miniconda3/envs/DTR-phage-pipeline/bin/python3.8: bad interpreter: Invalid argument

JiaLonghao1997