Nalini Ganapati

See https://github.com/GenomicsDB/GenomicsDB-Python

With `--genomicsdb-shared-posixfs-optimizations`, the storage system should only require read access. @droazen, will work towards a fix for this.

@vidprijatelj , I can't reproduce the issue on `MacOS` and `Centos 7`. Can you provide us with more information with respect to the system you are on? What is the...

Thanks @vidprijatelj. I see the [sticky bit](https://www.redhat.com/sysadmin/suid-sgid-sticky-bit) being used for groups for the workspace - `# flags: -s-`. That, by itself, seems to be OK, that is I am not...

@CHENG-KH, are you having `GenomicsDBImport datastore format folder permissions` as well? Can you follow https://github.com/broadinstitute/gatk/issues/8233#issuecomment-1466807447 and attach the stack trace please?

Is it possible to run gatk with `--java-options -DGATK_STACKTRACE_ON_USER_EXCEPTION=true')` to print a stack trace. Something along the lines of ``` gatk --java-options "-Xmx4g -DGATK_STACKTRACE_ON_USER_EXCEPTION=true" GenotypeGVCFs -R /mnt/nas/Stefano/Cashmere/Reference_Genome/GCF_001704415.1_ARS1_genomic.fna -V gendb://my_database -O...