Nalini Ganapati

See https://github.com/GenomicsDB/GenomicsDB-Python

With `--genomicsdb-shared-posixfs-optimizations`, the storage system should only require read access. @droazen, will work towards a fix for this.

@vidprijatelj , I can't reproduce the issue on `MacOS` and `Centos 7`. Can you provide us with more information with respect to the system you are on? What is the...

Thanks @vidprijatelj. I see the [sticky bit](https://www.redhat.com/sysadmin/suid-sgid-sticky-bit) being used for groups for the workspace - `# flags: -s-`. That, by itself, seems to be OK, that is I am not...

@CHENG-KH, are you having `GenomicsDBImport datastore format folder permissions` as well? Can you follow https://github.com/broadinstitute/gatk/issues/8233#issuecomment-1466807447 and attach the stack trace please?

Is it possible to run gatk with `--java-options -DGATK_STACKTRACE_ON_USER_EXCEPTION=true')` to print a stack trace. Something along the lines of ``` gatk --java-options "-Xmx4g -DGATK_STACKTRACE_ON_USER_EXCEPTION=true" GenotypeGVCFs -R /mnt/nas/Stefano/Cashmere/Reference_Genome/GCF_001704415.1_ARS1_genomic.fna -V gendb://my_database -O...

See https://github.com/broadinstitute/gatk/issues/7646

@lbergelson @gokalpcelik any chance of giving me access to the workspace for the 330 whole exomes?

We are not supporting arm64 machines from GenomicsDB as yet. The next release will probably will be limited to also support MacOS arm64. See #319. @MiyaaL are you running on...