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Published 20 hours ago • verified publisher icon naldeborgh7575

Is anyone able to run the complete pipeline?

Open ujjwalbaid0408 opened this issue 7 years ago • 8 comments

I am facing difficulties in running the code. I am not sure about which code I must run first and exactly where should I set the path for dataset?

ujjwalbaid0408 avatar Jun 12 '17 12:06 ujjwalbaid0408

you should run the brain_pipeline.py to generate training images and labels, then you can run the SegmentationModels.py to train the model.

Wang-Shuo avatar Jul 05 '17 11:07 Wang-Shuo

how we will get know that our training is complete ? and where we can find out our labeled data?

Jiyya avatar Jul 25 '17 13:07 Jiyya

On my repository i wrote a different cnn inspired to that code.. for simplicity i've cut out some features..you can give it a look maybe can help you: link

Cesarec88 avatar Jul 30 '17 19:07 Cesarec88

Can you please help me to run your code successfully?? i am facing error line 227, in  save_patient_slices(patients, 'reg')line 195, in save_patient_slices    a.save_patient(type_modality, patient_num)line 147, in save_patient    for slice_ix in progress(range(176)):line 553, in update    % (self.min_value, self.max_value))ValueError: Value out of range, should be between 0 and 176 however i have created these"reg, norm, n4" folder in prior basis.     

On Monday, July 31, 2017 12:30 AM, Cesare <[email protected]> wrote:

On my repository i wrote a different cnn inspired to that code.. for simplicity i've cut out some features..you can give it a look maybe can help you: link— You are receiving this because you commented. Reply to this email directly, view it on GitHub, or mute the thread.

Jiyya avatar Aug 12 '17 10:08 Jiyya

@Jiyya I got the same error, were you able to solve it?

darshthakkar avatar Oct 09 '17 19:10 darshthakkar

1 Can anyone help me to solve this problem? i am running BRATas dataset but this only make slices for first 38 patients how i can get slices for complete data set?

Jiyya avatar Oct 29 '17 14:10 Jiyya

Am facing difficulties to run this code of brain tumor segmentation there. Can anyone have errorless code? Please thanks [email protected]

myyaqubpython avatar Feb 08 '18 04:02 myyaqubpython

1 Can anyone help me to solve this problem? i am running BRATas dataset but this only make slices for first 38 patients how i can get slices for complete data set?

The reason behind this error is a few inputs did not having ground truth value. So If you removed those inputs from input data it will work fine.

sathickibrahims18 avatar Nov 19 '19 04:11 sathickibrahims18