Mark Watts

@clbarnes Could you elaborate on what the extrasynaptic connectivity matrix would look like? It sounds like it would be another set of 1-to-1, unidirectional connections between neurons like the existing...

The latest documentation is hosted here: https://pyopenworm.readthedocs.io/en/latest/

Downloaded the raw data. The version of monocle referenced in the link is old -- I'm not sure how that'll affect usage with later versions, but I've downloaded the latest...

Couldn't install the latest 'monocle' due to a failure to build VGAM.

I installed everything in an AWS EC2 instance and had a look at some of the raw data, although you can get most of this from their 'vignette' as well....

This *may* be useful in deciding how to implement the translator: https://stackoverflow.com/questions/5630441/how-do-rpy2-pyrserve-and-pyper-compare It may also be an option to use R in batch mode to just run a script to...

Updated to describe the task as it currently exists. AFAIK, no one has actively been working on it.

@travs : > PyOpenWorm (at least on the main branch) attempts to reconstruct the organism's anatomical data one-to-one (i.e. every cell in the organism (ex: ADAL or P11) has an...

This should be achievable now, but with the modification that a Neuron:ADAL should not have 'initial values', but should describe a range of values, give a distribution (e.g., normal centered...

Something like this is very doable. The contexts which make statements about an object will have a statement `object rdf:type object_type`. A more precise implementation is also possible by encapsulating...