Ming Wang issues

Results 105 issues of


                                            Ming Wang

[MASST] Fix un-used MAX_SHIFT_MASS parameter

bug

[Tests] Test Import Utility

This will import a task and copy all the input files into a separate protected space so that we don't accidentally delete it. Likely will do with massive dataset that...

[FBMN] Validator for quant table to make sure it is formatted correctly

- [x] Create negative control failure cases (e.g. missing columns, incorrect delimeter) - [x] MZMine2 - Implement delimiter is correct - [x] MZMine2 - Implement missing columns

enhancement

help wanted

[Classical Networking] Add citation to the workflow description.

Library Validator - Not working for GC mzML where all scans are MS1

[Classic Networking] Adding new binary for listing out peak matches and min ratio

[Networking] Adding user defined parameter for the level of parallelism we could allow

This is for testing, probably not going to merge

[MSMS-Chooser] Bug in Opening Files

[Example Link](https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=297005032b3a4a12a7654138b3e373ea)

[Link out to WikiData]

Using this code to do lookups: https://github.com/bjonnh/wikidata_molecules_for_gnps

[FBMN] Incorrect Edge Annotations

Address this part of the code: https://github.com/CCMS-UCSD/GNPS_Workflows/blob/3872e8cf39d54cbecf2d28b1757acddbb17970d7/feature-based-molecular-networking/tools/feature-based-molecular-networking/scripts/create_network_edges_outputformatting.py#L19 Seems to be giving bad annotations. Reported by mahbobeh.

bug