How to query Thermo AIF MS2 data?

Open yguitton opened this issue 2 years ago • 1 comments

Hi,

Is there a specific way to query an LC-MS file with All Ion Fragmentation (AIF) MS2 with massQL? If yes can you give me an example?

Or should i use query like that one even if my MSMS are taken from an AIF experiment and not a DDA? QUERY scaninfo(MS2DATA) WHERE MS2PROD=226.18:TOLERANCEPPM=5

Thanks

Apr 28 '23 11:04 yguitton

Hi Yann, sorry for the delay!

Yes, DIA should be no problem.

QUERY scaninfo(MS2DATA) WHERE MS2PROD=226.18:TOLERANCEPPM=5

should totally be fine, and so you'll find AIF scans that have that product peak since MSe will look like MS2 in the mzML files.

May 23 '23 18:05 mwang87