Kraken_db_install_scripts

Kraken_db_install_scripts copied to clipboard

scripts fail in download ?

3

failed: 1024 at download_archaea.pl line 49, line 412. failed: 1024 at download_bacteria.pl line 49, line 3824. failed: 1024 at download_viral.pl line 49, line 854. Thanks in advance ............

xgnusr

Hello @mw55309 , Thanks for this useful resource. Is it required to use the adapted `kraken-build` script? Considering the Kraken upgrade to v1.0 as well as v2.0 beta.. Also since...

mmiladi

See https://github.com/DerrickWood/kraken2

tseemann

Hi, I used your script and built a kraken database. However, I failed when I tried to shrink the database. The error messages are: ``` Use of uninitialized value $shrink_block_offset...

jeffreycapy

dustmasked reference genomes at any assembly level

1

Hi all, Is it possible to dustmask sequences before building the database as it is advised by Kraken developers? Is it also possible to specify to download references genomes at...

fconstancias