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                                            mvolar

Running the example from the README.md doesn't work

Hello, when running Bonito modified basecalling with default parameters as stated in the README.md : ``` bonito basecaller [email protected] ./pod5s/ --modified-bases 5mC --reference ../index.mmi > basecalls.bam ``` i get the...

Extremely long runtime with trained models when compared to default modified basecalled model

Hello again, Now I have issues with speeds when using the "inhouse" models when compared to "pretrained" models. Speed with inhouse: ``` > calling: 0%|1 | 26341/7455607 [48:10 calling: 0%|1...