Matteo Visconti di Oleggio Castello

Demean features within each run separately

1

After discussion at lab meeting (and some tests that this actually matters).

FIX add default header and entrypoint to docker and singularity files

1

Thanks to the archeological work by @yarikoptic in #620 it was relatively easy to fix. The `_header.yaml` template was not added anywhere. BTW, I had to rename the template from...

I guess we'll have to check if the same problem occurs with new freesurfer versions. Closes #625

Freesurfer 7.4.1 gets installed into `/opt/freesurfer-7.4.1/freesurfer`. Maybe it's because the tar file was created differently than other versions? Example to see the problem: ```bash $ VERSION=7.4.1; mkdir -p ./freesurfer-"$VERSION"; curl...

In the freesurfer template there was a leftover comment that ended up in one of the env variables (`FSF_OUTPUT_FORMAT`)

Our setup process will become obsolete in Python >= 3.12. `numpy.distutils` is deprecated, and setuptools is not installed in a python environment by default anymore. This will require some work...

MNT run tests on more recent versions of python

1

Given #91 I'm expecting to see failures for more recent python versions

Just checking if we can run tests on windows and macos too...

See https://hub.docker.com/r/repronim/neurodocker/tags