Fsl_resample

[dilekozkan]

Hello, I want to convert the 3d 111 flair image of the same patient to 3d 115 flair. And I want it to be in the transversal plane. I opened applyxfm in the user interface in fsl.

I put the flair image of the patient with the voxel sizes I wanted as the reference volume. It only takes the patient's voxel dimensions, not the image content, am i right? If the image will register, it will be wrong..

And I clicked the identity matrix button as transformation matrix question. Is there anything wrong with all this? Please let me know.

By the way, i ran this command and it didnt work. flirt -in /ms/flairhigh.nii -ref /ms/flairhigh.nii -applyxfm -out /ms/out

The image came in sagittal, but the transverse plane I put in was (user interface option) Thanks in advance!