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Using agfusion build command for ensembl >v95?
Hi Dr. Charles Murphy,
Thank you for developing AGFusion and making it publicly available.
I would like to use agfusion for ensembl >v95, and it seems
1. I will have to build the database myself using agfusion build
usage: agfusion build [-h] -d DIR -s SPECIES -r RELEASE --pfam PFAM [--server SERVER]
May I know if documentation of this command is available? (ie. what sort of file is expected as input for the --pfam option? I looked at http://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam35.0/ but unsure which file to use)
2. I will need to manually edit the 'max ensembl version' from 95 to 109 in utils.py
Would this be a correct thing to do - as the current allowed max is v95?
Thank you, Min