Unipressed

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https://rest.uniprot.org/docs/?urls.primaryName=uniprotkb#/Miscellaneous/getMappedPublicationsByUniProtAccession

multimeric

Integrate the OpenAPI spec

1

It turns out there *are* OpenAPI docs at https://rest.uniprot.org/docs/. Some info found here can't be found elsewhere.

multimeric

In theory we could replace all the `TypedDict` with pydantic models. Advantages: * Could implement advanced validation like regex etc * Could have low level models for things like ranges...

multimeric

e.g. html, rdf, fasta, obo, xlsx

multimeric

Document Literal entries

1

There doesn't seem to be a way to add docstrings to `Literal`, but perhaps they could be converted to enums with docstrings.

multimeric

Since this option is only relevant to `uniprotkb`.

multimeric

multimeric

Specifying the organism whe using IdMappingClient

3

Hello, thanks a lot for developing this package! I am using Unipressed as part of a package I am developing with my team. I was wondering if it was possible...

marcorusc

Closes #35. TODO: * [x] Implement the `taxon_id` argument in the API call * [x] Check the type signatures * [x] Write tests

multimeric

how many entries can be queried in UniprotkbClient.fetch_many(entry_list) at once.

1

I am curious to know how many entries I can query in `UniprotkbClient.fetch_many(entry_list)` at once. Thanks! In my test, I can query 1000 entries in `UniprotkbClient.fetch_many(entry_list) # len(entry_list)=1000` is fine....

Huilin-Li