Cenote-Taker2
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mtisza1
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
I am trying Cenote-take. Everything was fine until running tbl2asn step. Kindly check the following logfile ``` [tbl2asn] ERROR: Invalid inference value tRNAscan-SE score:33.8 [tbl2asn] ERROR: Invalid inference value tRNAscan-SE...
This is less of an issue, and more of a feature. I am using cenote-taker2 to annotate some manually curated contigs. It seems keen to annotate proteins as short as...
i just ran cenote-taker2, and this came up: Traceback (most recent call last): File "/home/Public/software/cenote-taker2/Cenote-Taker2/run_cenote-taker2.py", line 72, in args = parser.parse_args() File "/home/Public/Anaconda3/ENTER/envs/cenote-taker2_env/lib/python3.6/argparse.py", line 1734, in parse_args args, argv =...
GenBank is phasing out tbl2asn for table2asn https://www.ncbi.nlm.nih.gov/genbank/table2asn/
Hi Mike, Whenever I try to run the conda env create --file cenote-taker2_env.yml command I get the ResolvePackageNotFound error. To deal with this I tried to download bbtools from the...
Hi Mike, Recently， I ran cenote-taker2 and blastn against nt database & diamond against nr database with the contigs assembled by Megahit. I found that about 10000 sequences were classified...
Hi Mike, Thank you for Cenote-Taker2! However, I am facing a problem when i run the commond: `python ~/miniconda3/bin/Cenote-Taker2/run_cenote-taker2.py -c ~/hxj/depth_analysis/raw_data_2/contig_megahit/SRR9161502_9000000/final.contigs.fa -r SRR9161502_9000000 -p true -m 32 -t 32 2>&1...
Hi Mike, Thank you for Cenote-Taker2! It is doing a great job with our datasets. Question: There is no locus_tag or gene_id in our output gbf files - is there...
Hi, I am trying to install "_cenote-taker2_" on our HPC system for a local research group. I downloaded all databases and dependencies using the commit from 03/26/2020. I did a...
