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Fixing jcvoronoi_mex build failure on ubuntu in MTEX 6.1

Open argerlt opened this issue 4 weeks ago • 2 comments

This is less a bug report, more just creating a paper trail in hopes the next person doesn't also accidentally lose a day to library errors.

If you are:

  1. a Linux user
  2. using a newer version of MATLAB (2025b for me)
  3. using MTEX 6.1 to automatically download the correct .mexa64 files for you,

You might run into the same issue I did, where jcvoronoi_mex gives a Failure result during MTEX's install, and then a variation of the following error when running calcGrains:

 checking: jcvoronoi_mex.mexa64 failed
  --> [Invalid MEX-file '/path/to/mtex/mtex-6.1.0/mex/jcvoronoi_mex.mexa64': /path/to/matlab/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by jcvoronoi_mex.mexa64)]

This (I believe?) is because jcvoronoi is the only MTEX mex that is compiled from .cpp, and the version it's compiled with needs to match the libstdc++.so.6 INSIDE THE MATLAB INSTALL.

The two solutions that worked for me:

Option A: soft link your own libstdc++.so.6

find where the MATLAB libstdc++.so.6 file is (usually sys/os/glnx64), move it somewhere else as a backup, and replace it with a softlink to your local library

        cd <matlabroot>/sys/os/glnxa64 
        mkdir old_libs 
        mv libstdc++.so.6* old_libs 
        ln -s /usr/lib/x86_64-linux-gnu/libstdc++.so.6 libstdc++.so.6 
        # (Adjust paths as needed)

Option B: soft recompile the mex

Delete mtext-6.1.0/mex/jcvoronoi_mex.mexa64, get a mex builder if you don't already have one via sudo apt install build-essential and run mex_install from matlab.

Both ways worked for me, I'm not matlab-savy enough to know if one is better than the other.

I'll also add, as a Linux user, the mex changes in 6.1.0 have been a huge time saver and the above has been the only real problem I've seen so far. Thank you for the hard work, it makes my life considerably easier.

argerlt avatar Dec 10 '25 18:12 argerlt