osprey

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ImportError: No module named basesetup

1

Hi, trying to install Osprey using pip, I encounter the following error: login2.ls5(1002)$ pip install --user osprey Collecting osprey Using cached https://files.pythonhosted.org/packages/63/ac/f472540e6eae60a6086829e5b17ea255227def0ccd17e015be39b49d307d/osprey-1.1.0.tar.gz Complete output from command python setup.py egg_info: Traceback...

rsatijaUT

- [x] Implement feature / fix bug - [x] Add tests - [x] Update changelog Currently Osprey doesn't build with Python 3.7 or higher. This is due to a number...

RobertArbon

"merge/upgrade " Osprey with modified version from github

2

@khatuka31, I'm moving your inquiry to a new issue > Hi, @cxhernandez @rmcgibbo @mpharrigan > > I installed Ospray with conda, but would like to "merge/upgrade " with modified version...

cxhernandez

Osprey Recipe on Conda-forge

2

When Osprey 1.2 is released, I've volunteered to get a recipe for it up on conda-forge (along with hyperopt and possibly GPy) . I was wondering if anyone else wants...

synapticarbors

- [x] Implement feature / fix bug - [x] Add tests - [ ] Update changelog Adding PyTorch support re: https://github.com/msmbuilder/osprey/issues/219

cxhernandez

int64 is not JSON serializable

6

Hi, I'm running into an error that I've not seen before. I'm using already-featurized trajectories stored as text numpy arrays, to compare the performance of different featurizers. Here's the osprey...

jeiros

Support PyTorch Models

3

I think this will become a very useful feature in the future.

cxhernandez

Integrate msmreport

1

re: https://github.com/cxhernandez/msmreport/issues/6 This would make it easy to automatically generate reports from Osprey workflows using iPython notebook templates. I've been using it myself and it's really handy to batch generate...

cxhernandez

osprey plot on the cli dumps entire database, ignores project_name variable

3

Hard to say whether this falls under "bug" or "would be nice to have", but when one runs the `osprey plot config.yaml` command from the command line, it just dumps...

nhstanley

sqlite3.OperationalError with multiple workers

1

I'm running Osprey in an HPC facility using the PBS PRO queue system. I'm launching jobs as array jobs, so it is my understanding that multiple workers are accesing the...

jeiros