msmexplorer
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msmbuilder
Data visualizations for biomolecular dynamics
hello, I get a problem when I import msmexplorer as msme: --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) in ----> 1 import msmexplorer as msme [~/anaconda3/envs/tIC/lib/python3.6/site-packages/msmexplorer/__init__.py](https://vscode-remote+wsl-002bubuntu.vscode-resource.vscode-cdn.net/home/maoyoudong/tIC/~/anaconda3/envs/tIC/lib/python3.6/site-packages/msmexplorer/__init__.py) in ----> 1 from...
Hello, I get the following error when trying to import msmexplorer **ImportError: cannot import name '_scipy_univariate_kde' from 'seaborn.distributions'** I reinstalled seaborn with pip, pip3 and conda install. None of these...
HI all, I am recently trying to install msmexplorer on my virtual environment, the python version I use is 3.7 and the following error message shows up during the installation,...
see: https://github.com/msmbuilder/msmbuilder/issues/1066
Hi, I am trying to plot a 2D FES plot using MSM and tICA data. I have n_timescales =5. If I understand correctly this plot will give top 5 (or...
Upon trying to import msmexplorer, I get the following error. ``` --------------------------------------------------------------------------- ModuleNotFoundError Traceback (most recent call last) in () ----> 1 import msmexplorer as msme 2 import numpy as...
Hi, I've found this [paper](https://pubs.acs.org/doi/10.1021/acs.jctc.7b00346) which use Cross Validation and Gaussian Mixture Models to estimate Free Energy landscapes (they also compare them to other ways of estimating the densities), but...
`plot_free_energy` should take the MSM object rather than `pi`. This way ergodic trimming issues can be handled under the hood.