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Handle new start_retained_variant seen in a VEP v91 run

Open ckandoth opened this issue 6 years ago • 1 comments

It's not listed at https://useast.ensembl.org/info/genome/variation/predicted_data.html#consequences but it still shows up in the results of a large project. vcf2maf assigns it the lowest priority by default.

ckandoth avatar Mar 01 '18 23:03 ckandoth

The link is updated with "start_retained_variant" and assigned impact is "LOW". I think this is correctly handled by vcf2maf and you may consider removing the warning. I got few of these in my 20 sample data.

sagarutturkar avatar Jun 27 '18 19:06 sagarutturkar