lohhla

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One day, someone should at least add more informative errors to this script. The first step is a few `message()` statements which detail what part of the script is being...

evanbiederstedt

 run code: Rscript LOHHLscript.R \ --patientId example \ --outputDir ./exam_new/ \ --normalBAMfile./02.github_exam/bam/example_BS_GL.sam \ --BAMDir ./bam/ \ --hlaPath ./example-file/hlas2 \ --HLAfastaLoc ./data/example.patient.hlaFasta.fa \ --CopyNumLoc ./example-file/solutions.txt \ --minCoverageFilter...

khksw0403