your pipeline have tooooooooooo many bugs,I really don't make sense why you make pipeline in this way

[Spartanzhao]

Error in regionUniqMappedRegions[[grep(normalName, names(regionUniqMappedRegions), : attempt to select less than one element in get1index Execution halted Could You explain what's this command line going to do? I had already fixed a lots of bugs, But the code just run 1000 lines, and two thousands lines to go, I don't know how many more I need to face.

[Spartanzhao]

[1] "##########names(regionUniqMappedRegions)#############" [1] "21ZN18281B" "21ZN18281T-MRD" [1] "##########normalName#############" [1] "/gdata01/user/fengyj/test/31_report_system/1_GATK/MRD_06-09/result/21ZN18281B_21ZN18281T-MRD/2_Alignment/21ZN18281B.dedup.bqsr" [1] "##########names(regionUniqMappedRegions)#############" [1] "21ZN18281B" "21ZN18281T-MRD"