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Return numeric_val as well as cn_state

Open pintoa1-mskcc opened this issue 1 year ago • 0 comments

Oncokb CNA annotator can now accept numeric values that match GISTIC

Given that, can we report the numeric values in our final outputs as well? For reference:

For each gene-sample combination, a copy number level is specified:

"-2" is a deep loss, possibly a homozygous deletion "-1" is a single-copy loss (heterozygous deletion) "0" is diploid "1" indicates a low-level gain "2" is a high-level amplification.

pintoa1-mskcc avatar May 22 '23 18:05 pintoa1-mskcc