facets-suite
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rbindList vs rbind
https://github.com/mskcc/facets-suite/blob/b197695e0328bb81f778af53c3b9682b73c2dcba/annotate-maf-wrapper.R#L107
I'm not sure if it was the version of R but I was getting an error with this version: Error in rbindlist(output_maf, maf[!which(maf$Tumor_Sample_Barcode %in% : Input is data.table but should be a plain list of items to be stacked
I changed it to "rbind" instead of "rbindlist" and it worked fine.