Matthew Schechter comments

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                                            Matthew Schechter

[BUG] Ecophylo workflow: constraints on hmm_list.txt (hmm_source)

Thanks, @ivagljiva for bringing this issue to my attention, and apologies again @hdore for not seeing this earlier. I'll watch issues more carefully for EcoPhylo-related topics in the future, but...

[BUG] Stop codons appear when anvi-inspect magnification truncates and ORF

Hi @metehaansever, thanks for looking into this! I'm definitely on the `main` branch and can replicate the behavior in multiple contigs and contexts. How should we move forward?

Cell Ranger wrapper

Hi @fgvieira, thanks for the quick reply! You're right — while the code for Cell Ranger is available on GitHub, it’s distributed under a license that appears compatible with Bioconda’s...

[BUG] Pandas dataframe has no attribute 'append'

@philipwoods, thanks for posting this bug! Weirdly, I was not able to reproduce it on my end but I went ahead and refactored `self.convert_to_df()` to use`DataFrame.concat()` which should fix this...

[BUG] Pandas dataframe has no attribute 'append'

Here is the branch tracking this issue: https://github.com/merenlab/anvio/compare/master...deprecate-pandas-append-synteny

[BUG] The number of splits in a bin containing all splits does not equal the number of items from the interactive interface

Thanks for diving in @FlorianTrigodet! I made a reproducible example with the files attached above. At step 3 is exactly where the number of items in the EVERYTHING bin change...