msahraeian

@chunjie-sam-liu I have upgraded tools to latest version at #17 (for now I upgraded salmon to 0.11.0 since that is the latest version that supports SMEM option). The new docker...

The new release docker already has the latest HISAT2(v2.1.0).

I upgraded salmon to 0.11.0 since that is the latest version that supports SMEM option. Based on our analysis, we found salmon to perform better in SMEM mode. On Thu,...

@droeatumn apparently fusioncatcher have been updated recently. I fixed that in #19. Please use v0.3.1.