StainedGlass
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mrvollger
Make colorful identity heatmaps of genomic sequence
Hey there, ever since the parallelization update, I've been able to run StainedGlass on some especially large genomes and that has been such a game changer, thank you! Unfortunately, I'm...
Hi Mitchell, I've been using StainedGlass on my sequences, but I've encountered an issue where the job ends quickly without producing any expected results. Upon investigation, I discovered that the...
Hello: How should I solve this problem? Thanks a lot ```bash snakemake -s ./StainedGlass/workflow/Snakefile --configfile=./StainedGlass/config/config.yaml --config sample=Arabidopsis fasta=./Col-CEN_v1.2.fasta --cores 24 make_figures -p ``` ```bash [INFO] The sequence will be split...
Hello: How should I solve this problem? ```bash snakemake -s ./StainedGlass/workflow/Snakefile --configfile=./StainedGlass/config/config.yaml --config sample=Arabidopsis fasta=./Col-CEN_v1.2.fasta --cores 24 make_figures -p ``` ```bash IndentationError in file D:\R\plots\StainedGlass\workflow\Snakefile, line 51: expected an indented...
Hi there! Thanx for a such excellent software! It helps me a lot. I have a question about the value of diagonal alignment (self vs self). For me the self-comparison...
Hello, First of all, thanks a lot for the great pipeline. I'm having a bit of trouble getting stainedGlass to work on my longest sequences however. I'm using the provided...
Hi Mitchell, I was doing comparison of the centromere sequence of two species. When I set the parameters to “window: 500, cooler_window: 600, mm_f: 1000” the program went well. But...
