nanosv
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conda installation is not working ?
Hi, I got an issue:
conda install -c bioconda nanosv
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: /
Found conflicts! Looking for incompatible packages. failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
This still seems to be an issue. The workaround I found was to specify python=3.6 in the environment containing nanosv.
In fact, here's my nanosv.yml for conda:
name: nanosv
dependencies:
- sambamba
- python=3.6
- nanosv
This seems to work for me with a fully updated conda (built from scratch in a container). Note that it installs sambamba as well. Sambamba is a very obvious dependency, but the nanosv conda package doesn't list it as one.