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conda installation is not working ?

Open ptranvan opened this issue 4 years ago • 1 comments

Hi, I got an issue:

conda install -c bioconda nanosv

Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: / 
Found conflicts! Looking for incompatible packages.                                                                                                 failed                                                                                                                                                  

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

ptranvan avatar Apr 29 '20 11:04 ptranvan

This still seems to be an issue. The workaround I found was to specify python=3.6 in the environment containing nanosv.

In fact, here's my nanosv.yml for conda:

name: nanosv 
dependencies:
  - sambamba
  - python=3.6
  - nanosv

This seems to work for me with a fully updated conda (built from scratch in a container). Note that it installs sambamba as well. Sambamba is a very obvious dependency, but the nanosv conda package doesn't list it as one.

oneillkza avatar Feb 19 '21 22:02 oneillkza