Orthograph
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mptrsen
Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
Hello, I've been trying to run Orthograph in our cluster. I am requesting multiple cores; the resources are available in the cluster. However, when Orthograph is running, it does not...
I am trying to run Orthograph using a subset of COGs. I have tried to specify the cog-list in the config file and as an option in the command. However,...
Especially in vertebrate genome projects it is common that the same gene name is used in different species, but Orthograph does not seem to be able to handle this. If...
Add options to specify set name, description, and so on to orthograph-manager so that the table import can be automated. It should not need to be interactive.
There is a minor issue with the --help/-h argument: one would not be able to get the help without having config file in the same location as the executable or...
Having a sequence class that has certain properties and methods would make writing different output modules easier.
I have downloaded odb11v0_all_og_fasta.tab.gz, but I encountered an error: /tmp/KOGWDUqWkM line 79533545: expected 5 columns of data but found 9. Did I download the wrong file? Or should I modify...
