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unmanaged source folders problems
Having an unmanaged source folder shared between several projects is a common practice for most of cross scalajs-scala libraries.

By default I get some strange errors in IDEA configuration, here is a screenshot of my project ( https://github.com/denigma/semantic-web ) where it is easy to spot "null"s inside source folder. There I have semantic-shared/models and semantic-shared/rdf folders shared between scala and scalajs project.

P.S. I also created corresponding issue in IntellijIDEA bug tracker as I also see some bugs in a way it deals with shared source folders
http://youtrack.jetbrains.com/issue/SCL-6915