abra icon indicating copy to clipboard operation
abra copied to clipboard

Published 20 hours ago • verified publisher icon mozack

Change header in bam

Open FedikZe opened this issue 7 years ago • 1 comments

Dear all, I have problems with header after realignment of abra tool. Do you have same problem? FixMateInformation doesn't work. Thank you Filip

FedikZe avatar Feb 28 '18 09:02 FedikZe

No, we've not encountered header problems with ABRA.

If you suspect ABRA is causing an issue with the header, please provide the headers of the input BAM file, the output BAM file and examples of downstream errors you are seeing.

Also, please make sure to sort and index the output BAM file prior to downstream processing.

mozack avatar Feb 28 '18 22:02 mozack