TALON
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Published
20 hours ago •
mortazavilab
mortazavilab
many novel isoforms of very short, even 1bp
I may overlooked this but I am seeing many TALON novel isoforms that seem illogical short. I was wondering first how this could come to be as the alignment themselves are longer is this like where you have fuzziness from lots of reads overlapping and TALON is trying to collapse this into an average 5'-start which is somewhere in the middle of the overlap window and same for the 3'-end.
Secondly is there something TALON does to limit this? Now most seem to be genomic or antisense but I am interested to keep these hoping to find some intronic reads.
I am going to filter out with minimum length but was wondering if I was doing something wrong.
10007 2174489 ENSG00000132170.24 TALONT002174489 PPARG TALONT002174489 1 1 Known Genomic None 0 0 0 0 0 1
100117 2479590 TALONG000100117 TALONT002479590 TALONG000100117 TALONT002479590 1 1 Intergenic Genomic None 0 0 0 0 0 1
10012 1172011 ENSG00000225526.6 TALONT001172011 MKRN2OS TALONT001172011 1 1 Known Genomic None 0 0 1 0 0 0
100139 1243802 TALONG000100139 TALONT001243802 TALONG000100139 TALONT001243802 1 1 Antisense Genomic None 0 0 1 0 0 0
100189 703048 TALONG000100189 TALONT000703048 TALONG000100189 TALONT000703048 1 1 Antisense Antisense None 1 0 0 0 3 0
100208 703095 TALONG000100208 TALONT000703095 TALONG000100208 TALONT000703095 1 1 Antisense Antisense None 7 0 0 0 6 0
10021 1868017 ENSG00000144713.13 TALONT001868017 RPL32 TALONT001868017 1 1 Known Genomic None 0 0 0 0 1 0
10024 1279693 ENSG00000232746.1 TALONT001279693 LINC02022 TALONT001279693 1 1 Known Genomic None 0 0 0 1 0 0
10025 1279730 ENSG00000144711.16 TALONT001279730 IQSEC1 TALONT001279730 1 1 Known Genomic None 0 0 3 1 0 0
10025 2217324 ENSG00000144711.16 TALONT002217324 IQSEC1 TALONT002217324 1 1 Known Genomic None 0 0 0 0 0 1
10025 303636 ENSG00000144711.16 TALONT000303636 IQSEC1 TALONT000303636 1 1 Known Genomic None 1 1 0 0 0 0
100286 704104 TALONG000100286 TALONT000704104 TALONG000100286 TALONT000704104 1 1 Antisense Antisense None 1 0 0 0 2 0
10046 1291322 ENSG00000255021.1 TALONT001291322 ENSG00000255021 TALONT001291322 1 1 Known Genomic None 0 0 1 0 0 0
100510 704743 TALONG000100510 TALONT000704743 TALONG000100510 TALONT000704743 1 1 Antisense Antisense None 1 0 0 0 2 0
100512 704746 TALONG000100512 TALONT000704746 TALONG000100512 TALONT000704746 1 1 Antisense Antisense None 2 0 0 0 2 0
100514 704750 TALONG000100514 TALONT000704750 TALONG000100514 TALONT000704750 1 1 Antisense Antisense None 3 0 0 0 1 0
10053 305767 ENSG00000283392.1 TALONT000305767 ENSG00000283392 TALONT000305767 1 1 Known Genomic None 1 0 0 0 0 0
10053 305773 ENSG00000283392.1 TALONT000305773 ENSG00000283392 TALONT000305773 1 1 Known Genomic None 3 1 6 10 6 4
100553 2201800 TALONG000100553 TALONT002201800 TALONG000100553 TALONT002201800 1 1 Intergenic Genomic None 0 0 0 0 0 1
100560 705022 TALONG000100560 TALONT000705022 TALONG000100560 TALONT000705022 1 1 Intergenic Genomic None 1 0 0 0 0 0
100598 705420 TALONG000100598 TALONT000705420 TALONG000100598 TALONT000705420 1 1 Intergenic Intergenic None 1 0 0 0 0 1
100654 706224 TALONG000100654 TALONT000706224 TALONG000100654 TALONT000706224 1 1 Antisense Antisense None 2 0 0 0 0 0
100668 706279 TALONG000100668 TALONT000706279 TALONG000100668 TALONT000706279 1 1 Antisense Antisense None 1 0 0 0 0 0
100694 706483 TALONG000100694 TALONT000706483 TALONG000100694 TALONT000706483 1 1 Antisense Antisense None 1 0 0 0 2 0
100725 706687 TALONG000100725 TALONT000706687 TALONG000100725 TALONT000706687 1 1 Antisense Antisense None 3 0 0 0 8 0
100766 1902097 TALONG000100766 TALONT001902097 TALONG000100766 TALONT001902097 1 1 Intergenic Genomic None 0 0 0 0 2 0
100794 706828 TALONG000100794 TALONT000706828 TALONG000100794 TALONT000706828 1 1 Antisense Antisense None 4 0 0 0 10 0
10083 308267 ENSG00000206560.12 TALONT000308267 ANKRD28 TALONT000308267 1 1 Known Genomic None 1 1 6 6 1 1
100843 707002 TALONG000100843 TALONT000707002 TALONG000100843 TALONT000707002 1 1 Antisense Antisense None 1 0 1 5 0 0
100863 707199 TALONG000100863 TALONT000707199 TALONG000100863 TALONT000707199 1 1 Antisense Antisense None 1 0 0 0 0 0
100894 707439 TALONG000100894 TALONT000707439 TALONG000100894 TALONT000707439 1 1 Antisense Antisense None 1 0 0 0 0 0
100914 707837 TALONG000100914 TALONT000707837 TALONG000100914 TALONT000707837 1 1 Antisense Antisense None 3 0 1 1 0 0
100935 707977 TALONG000100935 TALONT000707977 TALONG000100935 TALONT000707977 1 1 Antisense Antisense None 4 0 0 0 6 0
100961 708106 TALONG000100961 TALONT000708106 TALONG000100961 TALONT000708106 1 1 Antisense Antisense None 2 0 0 0 0 0
100966 708159 TALONG000100966 TALONT000708159 TALONG000100966 TALONT000708159 1 1 Antisense Antisense None 1 2 0 2 0 2
100969 708271 TALONG000100969 TALONT000708271 TALONG000100969 TALONT000708271 1 1 Antisense Antisense None 3 0 0 0 0 0
10097 308755 ENSG00000131378.14 TALONT000308755 RFTN1 TALONT000308755 1 1 Known Genomic None 1 0 0 0 1 0
100973 708334 TALONG000100973 TALONT000708334 TALONG000100973 TALONT000708334 1 1 Antisense Antisense None 1 0 0 0 3 0
100984 708429 TALONG000100984 TALONT000708429 TALONG000100984 TALONT000708429 1 1 Antisense Genomic None 1 0 0 1 0 0
101036 708824 TALONG000101036 TALONT000708824 TALONG000101036 TALONT000708824 1 1 Antisense Antisense None 1 0 0 0 0 0
101056 708855 TALONG000101056 TALONT000708855 TALONG000101056 TALONT000708855 1 1 Antisense Antisense None 1 0 0 0 0 0
10108 872958 ENSG00000154822.18 TALONT000872958 PLCL2 TALONT000872958 1 1 Known Genomic None 0 1 0 0 0 0
101100 709087 TALONG000101100 TALONT000709087 TALONG000101100 TALONT000709087 1 1 Antisense Antisense None 2 2 0 0 0 0
10112 1297169 ENSG00000131374.14 TALONT001297169 TBC1D5 TALONT001297169 1 1 Known Genomic None 0 0 0 1 0 0
10122 873143 ENSG00000182568.17 TALONT000873143 SATB1 TALONT000873143 1 1 Known Genomic None 0 8 4 3 0 0
10127 1297456 ENSG00000183960.9 TALONT001297456 KCNH8 TALONT001297456 1 1 Known Genomic None 0 0 1 0 0 3
101282 711659 TALONG000101282 TALONT000711659 TALONG000101282 TALONT000711659 1 1 Antisense Antisense None 1 0 0 0 2 0
There are roughly around 3,500 novel isoforms that are below 20bp long out of some 320,000 expressed isoforms
