PyWGCNA

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In the module Network Plot, Can we label the node as gene_name instead of gene_id ?

2

Hello, I was learning WGCNA with the PyWGCNA program. It was easy to run. Thank you for developing this program. I have just an issue with a module Network Plot....

davidbinod

Re-naming modules

1

Hi, Narges Error 1- When running .analyseWGCNA, the code automatically assigns modules called “dimgrey”, “lightgrey”, “darkgrey” etc. My attempt was to manually change those. However, after changing columns "moduleColors" and...

NezaCankar

calculate Gene Significance

6

Hi, Narges 1) is there any way to extract the data used for the module-trait plotting? 2) How to extract genes with their MM and GS scores in each module?...

bsb2014

Error appearance in PyWGCNA (version 1.2.4) in Google colaboratory

4

I ran PyWGCNA under Google colaboratory environment. ①　pyWGCNA_CC.findModules() →UnboundLocalError: local variable 'merge' referenced before assignment ②　pyWGCNA_CC.analyseWGCNA() →ValueError: 'box_aspect' and 'fig_aspect' must be positive Details are below. [PyWGCNA problem](https://github.com/YoshifumiMiyagi/PyWGCNA-1/blob/main/PyWGCNA_2.ipynb)...

YoshifumiMiyagi

Error with function analyseWGCNA()

3

HI I AM TRYING TO FIND THE CORRELATION OF THE MODULES OF MY WGCNA OBJECT WITH THE TRAITS OF MY METADATA , BUT I GET THE FOLLOWING ERROR, DO ANYONE...

GERMAN00VP

x and y ticks

1

Hi, Now the x and y ticks cannot be displayed in the plot. Could you add them so we can see the x and y coordination clearly ? 

wangjiawen2013

Consensus Modules

13

Hello, I really like your PyWGCNA! I'm interested in using it for some of my research. I've been looking around what you currently have on git and I can't seem...

nmank