Pierre Morisse

Hi, I recently updated CONSENT and it now accepts both FASTA and FASTQ as input, and sequences are no long required to be in "one sequence per line" format. I...

Hey, I haven't tried CONSENT for such a purpose yet, so I can't promise anything. However, CONSENT was not designed with that purpose in mind. So I believe it will...

Hello, This is strange, CONSENT works fine until the end on that file here. Not exactly sure what could be causing the issue. Can you tell me a bit more...

Hello, Sorry for getting back to you so late as well. If it does work with other files, it might not be a problem with the computing environment indeed. However,...

Hello, Multiple errors here. 1) ` ./CONSENT-correct: line 189: /fs/scratch/PHS0338/appz/CONSENT/bin/explode: No such file or directory` This seems to indicate CONSENT was improperly built. Did you run the `install.sh` script after...

Hi, Great to hear the example tests ran with no problem. I already ran experiments on low N50 reads (around 1-2 kb too), and CONSENT behave quite well. The overlapping...

`minimap2: command not found` means that the minimap2 executable could not be found in your PATH. Does this directory `/fs/scratch/PHS0338/appz/minimap2` actually contain the minimap2 executable? If not, I would advise...

Hi, I hope you're doing better! Health should always be more important than work. Well, it's weird that you still get the error when adding the command to the script....

Hello, Best wishes for this new year! Hope it brings you better things than 2020. :) Sorry for not answering before, but I try to totally cut out work during...

Hello, Unfortunately, I do not have any experience with basecalling / quality filtering and such things. I usually directly deal with FASTA/FASTQ files, so I'm afraid I won't be able...