Peter Müller

Hertie Institute for Clinical Brain Science Tübingen Physican Scientist in Epilpesy

Results 5 comments of


                                            Peter Müller

!Significant differences in avg_log2FC between Seurat versions 4 and 5 in FindMarkers function

Look here: https://github.com/satijalab/seurat/issues/6701

Problem in Seurat and Doubltfinder

https://github.com/chris-mcginnis-ucsf/DoubletFinder/issues/177

Detecting Pseudobulk DACRs with FindMarkers using DESeq2

You do NOT need to do this: `so@assays$customPeakList$counts

LogFC calculation in FindMarkers

See https://github.com/satijalab/seurat/issues/6701

Add metadata to seurat obj

Try something like this ``` seurat.obj.T$group