Alireza Moradzadeh

Thanks for the codes, I will run them this week to benchmark their performance. `I also tested preallocating all data, but that had a minor implication only` My test also...

It works fine and I have 20-100 x faster neighbor list generation! Closing this.

I guess it should be possible https://namdanalyzer.readthedocs.io/en/latest/kdTree/periodic_kdtree.html. I am still learning Julia, do you have an example of using distance.jl with ballTree.

Here, it is. ``` # packages in environment at /home/amoradzadeh/anaconda3/envs/openmm-torch: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge astunparse 1.6.3 pyhd8ed1ab_0 conda-forge blosc 1.21.1...

@raimis I updated conda and tried installation with new environment, but the same error persists. I am trying mamba installation, but my conda fails to install mamba package. I need...

How did you solve the problem during the installation I get almost the same error! What should I install or update?

Hi, I will try it, thanks for the reply. Alireza