owlsim-v3
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monarch-initiative
Ontology Based Profile Matching
Bumps ant from 1.8.2 to 1.10.9. [](https://docs.github.com/en/github/managing-security-vulnerabilities/about-dependabot-security-updates#about-compatibility-scores) Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a...
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Bumps [junit](https://github.com/junit-team/junit4) from 4.12 to 4.13.1. Release notes Sourced from junit's releases. JUnit 4.13.1 Please refer to the release notes for details. JUnit 4.13 Please refer to the release notes...
port over the annotation sufficiency calculations from sim2
we need to add p-values statistics to profile matches. generally, we need to assess the statistical significance of a match (individual x individual, set x set ), in the context...
I want to be able to perform comparisons and get scores between two profiles directly, or perform matching to a supplied set of profiles (as opposed to the individuals in...
The test is non-deterministic, is it expected to fail on occasion, or is the test meant as a guarantee?
One strategy for generating negation data is to derived disjointness axioms based on PATO definitions. E.g. PATO already has: 'increased size' = size and inc-relative-to SOME normal 'decreased size' =...
Is there any (single) place all these different matching algorithms you are using are documented? I would like to test some alternative similarity measures, as well as develop an approach...
``` [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] owlsim ............................................. SUCCESS [ 1.848 s] [INFO] owlsim-core ........................................ FAILURE [ 5.273 s] [INFO] owlsim REST services ............................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO]...
- release on mvn - improve javadoc in selected places - add code examples - remove guice from core #62 - improve docs on how to get ontologies and data...