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Published 20 hours ago • verified publisher icon monarch-initiative

mapping a string span in a document to a partially overlapping term label is too risky

Open turbomam opened this issue 1 year ago • 1 comments

In the 2023-05-17 EGSB microbial traits hackaton, we found many cases where a text in the input text was mapped to the ENVTHES ontology, based on a partial overlap. Like

- id: ENVTHES:22024
  label: trophic strategy

When ENVTHES:22024's label is only "trophic"

That kind of fuzzy mapping should not be a default behavior.

turbomam avatar May 17 '23 21:05 turbomam