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MONDO:0004964 & MONDO:0019476 Peripheral T-cell lymphoma [Merge]

Open kanems opened this issue 1 year ago • 5 comments

Mondo term (ID and Label) MONDO:0004964 Peripheral T-cell lymphoma, not otherwise specified

Reason for deprecation UMLS puts these on same CUI NCIT has other sub-types grouped under this term (intent seems to be a broader concept without specific subtype markers/morphology)

Term to be merged with MONDO:0019476 Peripheral T-cell lymphoma Your nano-attribution (ORCID) If you don't have an ORCID, you can sign up for one here

kanems avatar Jan 25 '24 15:01 kanems

@kanems is MONDO:0019476 the correct Mondo ID? The label for this is 'primary cutaneous peripheral T-cell lymphoma not otherwise specified' not 'Peripheral T-cell lymphoma'. Also, what CUI do you see where these are the same?

twhetzel avatar Mar 26 '24 20:03 twhetzel

Hi @twhetzel yes, that's the right Mondo ID, I copied the SNOMED CT preferred name from our database by error, whoops! The merge suggestion is MONDO:0004964 (peripheral T-cell lymphoma, not otherwise specified) & MONDO:0019476 (primary cutaneous peripheral T-cell lymphoma not otherwise specified) Here is a screenshot from UMLS's Metathesaurus browser that shows their concept mappings for C0079774 (the CUI is highlighted in the URL at the top, x-refs I often see in Mondo and we treat as authoritative are also highlighted) image

kanems avatar Mar 28 '24 12:03 kanems

(2024-03-28 Mondo expert call): We might need to talk to a Tcell expert

sabrinatoro avatar Mar 28 '24 18:03 sabrinatoro

We have discussed this further and at this time we believe MONDO:0004964 (peripheral T-cell lymphoma, not otherwise specified) & MONDO:0019476 (primary cutaneous peripheral T-cell lymphoma not otherwise specified) to represent two different T-cell populations.

twhetzel avatar May 02 '24 02:05 twhetzel

Thanks for this decision, MedGen will keep these separate as well.

kanems avatar May 02 '24 11:05 kanems