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Split between genotype and variant views can be confusing

Open cmungall opened this issue 4 years ago • 1 comments

compare:

  • https://monarchinitiative.org/phenotype/MP:0013433#variant
  • https://monarchinitiative.org/phenotype/MP:0013433#genotype

particularly w.r.t Cog6

on the genotype page we have:

image

with a sole source of IMPC

on the variant page we have:

image

sources IMPC and MGI

Then under gene:

image

it's confusing for someone to figure out what is going on here. I think this is all the same data, it's just when we ingest from IMPC we get it at one level of granularity in the GENO hierarchy, and from MGI at another. (it's not actually clear that bringing in IMPC adds value)

cmungall avatar Jun 12 '20 03:06 cmungall

@cmungall what would you like to see as an improvement? I think one issue is we have two different IDs for the same genotypes, but this is because MGI mints genotype IDs downstream of the IMPC releases (although maybe that process has changed)

kshefchek avatar Jun 15 '20 20:06 kshefchek