variants in phenogrid

[nlwashington]

as per original ticket https://github.com/monarch-initiative/dipper/issues/174 originally from @pnrobinson: When I go to the Variants tab for Disease Group: Charcot-Marie-Tooth disease http://beta.monarchinitiative.org/disease/DOID%3A10595 and I click on one of the variants, I am taken to the Phenogrid page and the variant is associated with a set of phenotypes. I am not sure this is the correct/desired behaviour, since as far as I know we do not have this level of variant-for-variant phenotype data, and I would assume that the phenotype data is coming from the disease entry (BUT: not every patient/every variant is associated with all of these phenotypic features of course!). I think the variants should be linked to their source, which is also not clear from this Webpage.

[yuanzhou]

It looks like those 11 phenotypes are used to render the phenogrid view. I don't see it does anything with variants.

[kshefchek]

@nlwashington if we can't reliably say that a variant is associated with a phenotype, shouldn't we remove this from the solr association table? Or is there an advantage to showing the inferred phenotype relationships from the genotype/organism to phenotype associations.