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Parse forward slashes in gwas catalog

Open kshefchek opened this issue 3 years ago • 1 comments

For example the row:

2020-06-25	25555482	Gelernter J	2014-09-16	Biol Psychiatry	www.ncbi.nlm.nih.gov/pubmed/25555482	Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans.	Nicotine dependence symptom count	3,529 African American individuals, 4,117 European American individuals	NA	6p21.32	6	32383959	intergenic	TSBP1-AS1			ENSG00000225914			rs35794310/rs147955325/rs11415565-TG	rs35794310/rs147955325/rs11415565	...

Per https://www.ncbi.nlm.nih.gov/snp/rs35794310 - rs35794310 was merged with rs11415565 and https://www.ncbi.nlm.nih.gov/snp/rs147955325 - rs147955325 was merged with rs11415565

We should model this similarly to how we model deprecated identifiers in ontologies, but it's unclear from this row alone which identifier is the current one (is it always the last in the list?)

See https://github.com/monarch-initiative/monarch-ui/issues/383

kshefchek avatar Jan 04 '21 15:01 kshefchek