biolink-api
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monarch-initiative
support "expression" category for slimmer function
Currently we support function and phenotype. We should do the same to support an expression category.
FYI @cmungall / @selewis
yep, that's a show stopper
On Tue, Jul 17, 2018 at 5:05 PM Nathan Dunn [email protected] wrote:
Currently we support function and phenotype. We should do the same to support an expression category.
FYI @cmungall https://github.com/cmungall / @selewis https://github.com/selewis
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Show-stopper must do, or show stopper can’t do?
On Jul 17, 2018, at 5:15 PM, Suzanna Lewis [email protected] wrote:
yep, that's a show stopper
On Tue, Jul 17, 2018 at 5:05 PM Nathan Dunn [email protected] wrote:
Currently we support function and phenotype. We should do the same to support an expression category.
FYI @cmungall https://github.com/cmungall / @selewis https://github.com/selewis
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Just meant that until slimming in these other ontologies is possible there is little else to do in the interim
On Tue, Jul 17, 2018 at 6:00 PM Nathan Dunn [email protected] wrote:
Show-stopper must do, or show stopper can’t do?
On Jul 17, 2018, at 5:15 PM, Suzanna Lewis [email protected] wrote:
yep, that's a show stopper
On Tue, Jul 17, 2018 at 5:05 PM Nathan Dunn [email protected] wrote:
Currently we support function and phenotype. We should do the same to support an expression category.
FYI @cmungall https://github.com/cmungall / @selewis https://github.com/selewis
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So @selewis are you saying that there is an upstream blocker for this to be implemented, or until this is implemented, we won't be able to have an expression ribbon?
@deepakunni3 For expression example query looks like this:
https://api.monarchinitiative.org/api/bioentityset/slimmer/expression?&slim=UBERON:0016490&slim=UBERON:0001009&slim=UBERON:0001007&slim=UBERON:0000949&slim=UBERON:0001008&slim=UBERON:0002330&slim=UBERON:0002193&slim=UBERON:0002416&slim=UBERON:0002423&slim=UBERON:0002204&slim=UBERON:0001016&slim=UBERON:0005726&slim=UBERON:0007037&slim=UBERON:0000990&slim=UBERON:0001004&slim=UBERON:0002104&slim=UBERON:0001032&slim=UBERON:0000924&slim=UBERON:0000925&slim=UBERON:0000926&slim=UBERON:0003104&slim=UBERON:0001013&slim=UBERON:0000026&slim=UBERON:0000478&slim=UBERON:6005023&slim=UBERON:0002539&slim=UBERON:0001062&slim=UBERON:0000068&slim=UBERON:0000092&slim=UBERON:0007023&slim=UBERON:0000105&subject=HGNC:583