biolink-api
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Discrepancies in results for HP and GO (same slim query)
For GO/GOlr the results contain this: reference: [ "MGI:MGI:5299957", "PMID:22031545" ]
For HP/Monarch the results contain this: publications: [ { id: "PMID:103464" }, { id: "PMID:19563798" }, { id: "PMID:4972360" }, { id: "PMID:3794606" } ] So, for the same type of information there are two differences
- reference versus publications
- simple array versus array of maps
Needs to be done in just one way.
Queries are these (for example) https://api.monarchinitiative.org/api/bioentityset/slimmer/function?&slim=GO:0003824&slim=GO:0004872&slim=GO:0005102&slim=GO:0005215&slim=GO:0005198&slim=GO:0008092&slim=GO:0003677&slim=GO:0003723&slim=GO:0001071&slim=GO:0036094&slim=GO:0046872&slim=GO:0030246&slim=GO:0003674&slim=GO:0008283&slim=GO:0071840&slim=GO:0051179&slim=GO:0032502&slim=GO:0000003&slim=GO:0002376&slim=GO:0050877&slim=GO:0050896&slim=GO:0023052&slim=GO:0010467&slim=GO:0019538&slim=GO:0006259&slim=GO:0044281&slim=GO:0050789&slim=GO:0042592&slim=GO:0007610&slim=GO:0008150&slim=GO:0005576&slim=GO:0005737&slim=GO:0005856&slim=GO:0005739&slim=GO:0005634&slim=GO:0005694&slim=GO:0016020&slim=GO:0031982&slim=GO:0071944&slim=GO:0030054&slim=GO:0042995&slim=GO:0032991&slim=GO:0045202&slim=GO:0005575&subject=MGI:MGI:97490
https://api.monarchinitiative.org/api/bioentityset/slimmer/phenotype?&slim=HP:0025461&slim=HP:0001881&slim=HP:0020047&slim=HP:0001872&slim=HP:0001977&slim=HP:0005561&slim=HP_0031377&slim=HP_0025463&slim=HP_0025354&slim=HP:0001892&slim=HP:0001928&slim=HP:0001978&slim=HP:0001871&slim=HP:0004377&slim=HP:0003549&slim=HP:0000234&slim=HP:0000464&slim=HP:0040064&slim=HP:0001939&slim=HP:0001197&slim=HP:0001626&slim=HP:0025031&slim=HP:0000818&slim=HP:0000119&slim=HP:0002715&slim=HP:0001574&slim=HP:0003011&slim=HP:0000707&slim=HP:0002086&slim=HP:0000924&slim=HP:0045027&slim=HP:0001608&slim=HP:0001507&subject=MGI:MGI:97490
@cmungall Does this have to do with differences in the way evidence is modeled between GO and Monarch? i.e. https://github.com/biolink/ontobio/issues/126