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Discrepancies in results for HP and GO (same slim query)

Open selewis opened this issue 6 years ago • 1 comments

For GO/GOlr the results contain this: reference: [ "MGI:MGI:5299957", "PMID:22031545" ]

For HP/Monarch the results contain this: publications: [ { id: "PMID:103464" }, { id: "PMID:19563798" }, { id: "PMID:4972360" }, { id: "PMID:3794606" } ] So, for the same type of information there are two differences

  1. reference versus publications
  2. simple array versus array of maps

Needs to be done in just one way.

Queries are these (for example) https://api.monarchinitiative.org/api/bioentityset/slimmer/function?&slim=GO:0003824&slim=GO:0004872&slim=GO:0005102&slim=GO:0005215&slim=GO:0005198&slim=GO:0008092&slim=GO:0003677&slim=GO:0003723&slim=GO:0001071&slim=GO:0036094&slim=GO:0046872&slim=GO:0030246&slim=GO:0003674&slim=GO:0008283&slim=GO:0071840&slim=GO:0051179&slim=GO:0032502&slim=GO:0000003&slim=GO:0002376&slim=GO:0050877&slim=GO:0050896&slim=GO:0023052&slim=GO:0010467&slim=GO:0019538&slim=GO:0006259&slim=GO:0044281&slim=GO:0050789&slim=GO:0042592&slim=GO:0007610&slim=GO:0008150&slim=GO:0005576&slim=GO:0005737&slim=GO:0005856&slim=GO:0005739&slim=GO:0005634&slim=GO:0005694&slim=GO:0016020&slim=GO:0031982&slim=GO:0071944&slim=GO:0030054&slim=GO:0042995&slim=GO:0032991&slim=GO:0045202&slim=GO:0005575&subject=MGI:MGI:97490

https://api.monarchinitiative.org/api/bioentityset/slimmer/phenotype?&slim=HP:0025461&slim=HP:0001881&slim=HP:0020047&slim=HP:0001872&slim=HP:0001977&slim=HP:0005561&slim=HP_0031377&slim=HP_0025463&slim=HP_0025354&slim=HP:0001892&slim=HP:0001928&slim=HP:0001978&slim=HP:0001871&slim=HP:0004377&slim=HP:0003549&slim=HP:0000234&slim=HP:0000464&slim=HP:0040064&slim=HP:0001939&slim=HP:0001197&slim=HP:0001626&slim=HP:0025031&slim=HP:0000818&slim=HP:0000119&slim=HP:0002715&slim=HP:0001574&slim=HP:0003011&slim=HP:0000707&slim=HP:0002086&slim=HP:0000924&slim=HP:0045027&slim=HP:0001608&slim=HP:0001507&subject=MGI:MGI:97490

selewis avatar Jun 08 '18 20:06 selewis

@cmungall Does this have to do with differences in the way evidence is modeled between GO and Monarch? i.e. https://github.com/biolink/ontobio/issues/126

deepakunni3 avatar Jul 03 '18 23:07 deepakunni3