SEPIO-ontology
SEPIO-ontology copied to clipboard
monarch-initiative
Ontology for representing scientific evidence and provenance information
`Confidence level` is currently defined as: "A data item that quantifies the level of confidence an agent has that a particular piece of information is true." A `confidence level` quantifying...
The problem is that the label already conflicts with existing widely used relationships, flagging up errors in our QC pipelines: https://monarch-initiative.github.io/monarch-ontology-dashboard/dashboard/sepio/dashboard.html Would it be ok to rename the relation this...
SEPIO is defining SEPIO defining several dc properties as DPs, causing illegal punning when integrating with other ontologies. see also https://github.com/information-artifact-ontology/ontology-metadata/issues/90 for a lengthy discussion why that is a problem....
Prioritise after #29
https://github.com/monarch-initiative/SEPIO-ontology/blob/master/src/ontology/sepio.owl#L1706 That causes massive confusion for some downstream uses.
Could we add ClinVar's review status terms to SEPIO? https://www.ncbi.nlm.nih.gov/clinvar/docs/review_status/ cc @justaddcoffee @mbrush
I'm pretty sure this is the 'Value Set' class we've included for our ClinGen extension, but I wanted to make you aware of this.
In order to have Agent more closely reflect the "Agent" concept from W3C Provenance's model we should consider 1. a recursive "actedOnBehalfOf" relationship between Agents to allow for agents that...
@mbrush FYI - the links you are using in the wiki and ontobee entrees (geno for example) to reference the clingen models are old and not working (sorry - we...
published in code, but no longer exists. was ! 'created_at_location' it is possible but not proven that although defined, it may not be used now. in sepio_developer.owl it is mentioned...
Metadata
Owner
Metadata
Ontology for representing scientific evidence and provenance information