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Compression efficiency: some mmCIF files are smaller than their BinaryCIF counterparts when not gzipped

Open papillot opened this issue 9 months ago • 0 comments

This is a question rather than an issue report. I have downloaded the BinaryCIF file for structure 5z6y from RCSB and the corresponding mmCIF file.

format size gzipped
mmCIF 227kB 58kB
BinaryCIF 269kB 32 kB
mmtf 24kB 17kB

What surprises me is that the BinaryCIF file takes more space than the mmCIF file, even if most of the information is contained in the atom_site table which should be amenable to efficient compression.
This seems to contradict the claims of the original BinaryCIF publication.

I am wondering if there is an issue with the current implementation of the format which would use less efficient compression techniques?

papillot avatar Apr 29 '24 12:04 papillot