molgenis-pipelines
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20 hours ago •
molgenis
molgenis
Pipelines for NGS, imputation, gwas, ...
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molgenis-pipelines issues
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- upgrade to GATK 3.5 - possible update in the variant calling protocol for the different batches (Xpar and Xnonpar regions)
enhancement
protocol
NGS_RNA
The parameter list assumes that every new run is a new library preparation. This might cause artifacts not to be removed by MarkDuplicates. My suggestion is to make this parameter...
enhancement
parameters
enhancement
Impute2 manual should be used to extent this list: impute2FileArg