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Published 20 hours ago • verified publisher icon mojaveazure

How to convert from Seurat visium to AnnData

Open hzongyao opened this issue 3 years ago • 3 comments

How to convert from Seurat visium data to AnnData for scanpy? Thank you !

hzongyao avatar Jun 17 '21 14:06 hzongyao

Here are the instructions :) https://mojaveazure.github.io/seurat-disk/articles/convert-anndata.html

But there are people who have has errors with this (including myself)

AAA-3 avatar Sep 03 '21 18:09 AAA-3

@mojaveazure Hi, will there be an update to help convert Seurat visium object to AnnData?

Thanks!

cf98 avatar Jan 17 '23 17:01 cf98

Any news ? 2 years for a change ?

BenjaminDEMAILLE avatar Jun 20 '23 14:06 BenjaminDEMAILLE