mocherry

help with alra

1

Dear all, I am kind of lost how to deal with the results of ALRA. When I process a Seurat object with ALRA I get a new assay. How do...

question about how to define the DRACH-motif

1

Hi all, we have done basecalling with Dorado with the following command: dorado basecaller [email protected] --modified-bases m6A_DRACH > output bam.bam Do I have to search for the DRACH sequence again...

bed file resulting from pileup and igv

3

Dear all, can I use the bed-file resulting from the modkit pileup command directly in IGV or do i have to modify it somewhow? Thanks and best, Matthias

very basic question

1

Dear all, I am trying to follow the tutorials of empanada and get stuck with the fine-tuning part. Not being too familiar with Napari, I am unable to find: Merge...

Dear all, I am trying to analyze direct nanopore RNA sequencing data with salmon. Now I seem to have problems with getting the command line properly: I use: salmon quant...

ImportError: DLL load failed while importing _nifty: Das angegebene Modul wurde nicht gefunden

5

Dear all, as I could not get Micro-Sam to work with the Windows-Installer, I tried again with Mamba. However, now I get the following error: Failed to import command at...

function 'FTC_CMapCache_Lookup' not found

5

Dear developers, I tried to install micro-sam with the windows installer and when trying to run it I get the following error: function 'FTC_CMapCache_Lookup' not found Any idea what is...