mne-tools
Add QC + Full MNE Report tutorial
Reference issue
Fixes #13493
What does this implement/fix?
This PR implements a combined QC + Full MNE report workflow.
It merges the essential QC steps used in the mne-bids-pipeline with the standard MNE report features, allowing users to generate a comprehensive HTML report without requiring anatomical dependencies (BEM, coregistration, or forward/inverse solutions).
The report includes:
- Raw data overview and PSD plots
- Event visualization
- Epochs overview
- ICA diagnostics
- Evoked responses
- Covariance and projectors
- Custom figures, images, and code
Additional information
- Tested on sample MNE datasets with raw, epochs, and ICA data.
- No changes to existing pipeline functions; fully backward compatible.
- This PR does not include source-space analyses (BEM, forward/inverse solutions).
- Documentation and example tutorial added for users.
Rather than changing 70_report.py the idea -- since it's complementary info -- would be to create a new tutorial/example instead
Sorry for the delayed response — I had exams and wasn’t able to check emails or work on it earlier. I’ll create a separate tutorial instead of modifying 70_report.py by the end of the week. I'll also remove the unnecessary files. Thank you for the guidance!
On Fri, 12 Dec 2025 at 00:58, Eric Larson @.***> wrote:
larsoner left a comment (mne-tools/mne-python#13532) https://github.com/mne-tools/mne-python/pull/13532#issuecomment-3643460454
Rather than changing 70_report.py the idea -- since it's complementary info -- would be to create a new tutorial/example instead
— Reply to this email directly, view it on GitHub https://github.com/mne-tools/mne-python/pull/13532#issuecomment-3643460454, or unsubscribe https://github.com/notifications/unsubscribe-auth/BKS4EIWBTGBJJKT6M7KX2WD4BHAWVAVCNFSM6AAAAACOGCH55KVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTMNBTGQ3DANBVGQ . You are receiving this because you authored the thread.Message ID: @.***>
@larsoner Thanks for the guidance! I’ve cleaned up the PR by removing unintended files and moved the work into a new standalone tutorial under doc/tutorials/preprocessing/, without modifying 70_report.py or other core files.
Please let me know if you’d like any structural or content changes.
@larsoner Thanks for the thorough review! I’ve made the mentioned changes — please take another look. Happy to iterate further if needed.