mne-tools
unable to locate the script that creates a file used in 99-make_reports
The group-level report in 99-make_reports.py loads the file eeg_faces_highpass-%sHz-ave.fif that I can't find in my files (even though I ran all the scripts) nor a reference to it in any of the scripts. Could you please help me locate this file or the script that should have produced it?
https://github.com/mne-tools/mne-biomag-group-demo/blob/6599461d400305c9fa5bc22342d33443a86cce47/scripts/processing/99-make_reports.py#L87
I think this needs to be updated to match this:
https://github.com/mne-tools/mne-biomag-group-demo/blob/6599461d400305c9fa5bc22342d33443a86cce47/scripts/processing/11-group_average_sensors.py#L36
By the way, this package is not actively maintained. You might get mileage from using:
https://github.com/mne-tools/mne-bids-pipeline
unless you're doing something specific to the Faces dataset
Thank you @jasmainak! And sorry for replying so late.
We are using the analysis reported in Jas et al. (2018) and the code in this here repository as the basis for a tutorial on reproducible MEEG analysis and wanted to reproduce the group results from 99-make_reports.py. We ended up using the code in https://github.com/mne-tools/mne-biomag-group-demo/blob/master/scripts/results/group_analysis/plot_group.py.
I see, do feel free to share any educational materials that result from this. I'd be happy to share this with colleagues