mmterpstra

Yes, but a few thing need to be tested. - Working achors - The achor links work in the preview and do not mess up scrolling - Check for reserved...

I did not test it because I did not have time/experience to set this up/test this I hoped the community would pick this up. If you like it you could...

maybe this is the way to start for a complete makefile: https://www.gnu.org/software/autoconf/manual/autoconf.html#Making-configure-Scripts

It tries to match `$line =~ m/.+\t[0-9]{1,}\t[0-9]{1,}\t[A-Za-z0-9]{1,}.+/gs` can you run the code below and paste the results here? ``` perl -wne 'warn "Invalid line !!!${_}!!! at $. " if(not(m/.+\t[0-9]{1,}\t[0-9]{1,}\t[A-Za-z0-9]{1,}.+/gs));' Target_annotated_intervals.bed...

The code is confusing maybe run a dos2unix or try (this is more like the actual parsing of the file): ``` perl -wne 'my @bed =;my $i = 0; map...

Yes! This helps: the last '.+' isn't matched if you change the 'T' to a two letter combination then it will work. lazy fix: ``` perl -wlape 'if(length($F[3]) == 1...

The single letter name gives errors in convading. Also update the code above cause the gene name T should be changed to a constant name for the gene based normalsation....

Good luck on the validation!

I was hoping for them to inspect the project but due to the large amount of changes they postponed it. One if the things missing in my repo is runnning...

Same here. This effects running picard intervallisttools with the scatter command for example. Might be os depent or cromwell version depent affects cromwell 56 running with java 11 on CentOS...